Tools for protein side chain conformation analysis and editing
This series of tools allows the analysis and editing of protein side chain conformations, as well as side chain positioning onto a protein backbone and the comparison of two series of side chains conformations. Protein coordinates must be specified using the Protein Data Bank format.
Note: SCit is based on the encoding of the protein using a Hidden Markov Model derived structural alphabet. Hence, it does not work for fragmented proteins.
More information in the help page below.
Additional help here.
To compare the conformations of the side chains of two PDB files, go here.