SABBAC v1.2: Structural Alphabet based protein Backbone Builder from Alpha Carbon trace.

This tool is for the reconstruction of complete protein structures from their alpha-carbon description. Side chains positionning is performed by SCIt method. You have to choose between:

• Upload a PDB file with CA coordinates
• Paste PDB file lines in the text area
• Type a PDB Id in the text area in lower case (Ex: 1pgb or 2ci2 or 1timA (for chain A of 1tim)...)
• Paste a PDB URL instead of an id in the text area
• If you specify both upload and paste data only the upload will be considered

Note that:

• SABBAC currently only accepts files having one chain.
• More information [ SABBAC DOCUMENTATION ]

Upload a PDB File	Number of models to build 1 2 3 4 5 6 7 8 9 10	Position side chains Yes No	CA trace encoding Force
Or paste data, PDB id or URL

*SABBAC v1.2 energy implementation. This could lead to different results. See the doc for more information about the performance of this new energy function.

REFERENCE:
Maupetit J, Gautier R, Tuffery P.
SABBAC: online Structural Alphabet-based protein BackBone reconstruction from Alpha-Carbon trace.
Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W147-51.

RPBS - EBGM - last-update: 09/25/06