SA-Encode

A simple tool to encode a protein 3D structure and display how it is encoded using HMM derived structural alphabet.

This will encode 3D file(s) (PDB format) into a 1D encoding of a 27 state structural alphabet (HMM learnt) and then display the structure using colouring scheme dependant on the encoding..

More information on HMM structural alphabets here
For a more complete access to encoded protein structures, please prefer: SA-Encoder

upload a PDB File (specifying an upload, the PDB entry field will be ignored)
or specify a PDB entry (ex: 1tim, or 1timA for chain A of the 1tim pdb entry)
Display as: