the Protein Picture Generator v1.21

A simple tool to generate, given a protein structure file (PDB format), a picture of it.
Additionnal help here
v1.21: more selections, new previewer(12-2005), small bug fix (06-2006).
Early 2007: have you seen the PMG ?


Select a file (.pdb)
   Chains to visualize (ex: A,D):
or enter a PDB Id   (ex: 1tim, 1timA)

Here is a tool to visualize the sequence of a PDB file (and get the correct residue numbers).


Default representation :

Title :           Advanced parameters
 
Display:
  Backbone : 
    as : 
   Color : 
view named colors
  SideChains : 
    as : 
   Color : 
  Heteros : 
    as : 
   Color : 
  H bonds : 
   Color : 
  Surface : 
   Opacity : 
   Color : 
Advanced parameters
 
Scene:
Centre on : 
Focus on : 
   View Angle : 
     Stereo : 
Adjust: 
   X rot :
   Y rot :
   Z rot :
Order : 
Picture:
Background color : 
   Image Size : 
   Format : 
   Animation (gif,mpg): 
 
Produce :     
Advanced parameters

 


Supplementary representations:
You can specify specific representations for selections. see the Help page

Selection1 :
   Display as :
   Color :    view named colors
Selection2 :
   Display as :
   Color :    view named colors
Selection3 :
   Display as :
   Color :    view named colors
Selection4 :
   Display as :
   Color :    view named colors
Selection5 :
   Display as :
   Color :    view named colors
Selection6 :
   Display as :
   Color :    view named colors
Selection7 :
   Display as :
   Color :    view named colors
Selection8 :
   Display as :
   Color :    view named colors

 



Advanced parameters:

Title options:     back to basic parameters
Position (pixels) X :
     Y :
Font :
Size :
Face :
Color : view colors

Focus options:     back to basic parameters
   X trn :
   Y trn :
   Z trn :
Animation options:     back to basic parameters
   Frames :
   Step :
   Delay :

Color options:     back to basic parameters   view colors
helix :
strand :
coil :
positive :
negative :
neutral :
 
carbon :
nitrogen :
oxygen :
sulfur :
phosphor :
hydrogen :
iron :
 
ALA :
ARG :
ASN :
ASP :
CYS :
GLN :
GLU :
GLY :
HIS :
ILE :
LEU :
LYS :
MET :
PHE :
PRO :
SER :
THR :
TRP :
TYR :
VAL :
 
backbone :
side-chains :
TFac1From Color:
TFac1ToColor :
TFac1From :
TFac1To :
TFac2From Color :
TFac2To Color :
TFac2From :
TFac2To :
 
1st chain :
2nd chain :
3rd chain :
4th chain :
 
hydrophobic :
hydrophylic :
basic :
acidic :
polar :
aromatic :
aliphatic :